A machine learning toolkit for automated processing of multiplexed immunofluorescence images
McGrady et al., SITC (2023)
Methods
Poster
Integrative Spatial Multi-Omics Analysis of Nsclc Tumor Microenvironment Identifies Key Features Associated With Response to Immune Checkpoint Inhibitor Therapy
Hamel et al., SITC (2023)
Cancer
Poster
From images to insights - Deep spatial profiling reveals disease and treatment biomarkers
Kaur et al., SITC (2023)
Cancer
Publication
Spatial Proteomics of Human Diabetic Kidney Disease
Kondo et al., bioRxiv. (2023)
Autoimmune
Publication
Combined Near Infrared Photoacoustic Imaging and Ultrasound
Schneider et al., medRxiv (2023)
Cancer
Poster
An end-to-end Visium spatial transcriptomics computational pipeline for generating low-code interactive reports of spatial insights
Hamel et al., AACR (2023)
Methods
Poster
Precise spatial multiplexing of protein biomarkers for immune profiling in tissue samples with ChipCytometry™
Kwarta et al., AACR (2023)
Methods
Publication
7-UP: generating in silico CODEX from a small set of immunofluorescence markers
Wu et al., bioRxiv (2022)
Methods
Publication
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy
Mayer et al., Sci. Adv. (2023)
Autoimmune
Tech Note
Multiplex imaging and analysis using the Enable Cloud Platform to predict TNF inhibitor response in ulcerative colitis patients
2023
Autoimmune
Publication
A robust platform for integrative spatial multi-omics analysis to map immune reponses to map SARS-CoV-2 infection in lung tissue
Tan et al., bioRxiv (2023)
Infectious Disease
Publication
Single-cell transcriptomic consensus of endothelial changes induced by matrix stiffness and the association with atherosclerosis
Zamani et al., Adv. Funct. Mater. (2022)
Cardiovascular
Publication
Multi-omic and spatial dissection of immunotherapy response groups in non-small cell lung cancer
Monkman et al., Immunology (2023)
Cancer
Poster
Immune profiling of immunotherapy and adjuvant chemotherapy pretreatment of NSCLC tissues by CODEX
Monkman et al., AACR (2023)
Cancer
Poster
Single-cell spatial proteomic analysis of the tumor microenvironment in naive NSCLC samples with immunotherapy treatment and response data
Cumberbatch et al., AACR (2023)
Cancer
Poster
Design and validation of ultrahigh-plex discovery panels for immuno-oncology and oncology
He et al., AACR (2023)
Cancer
Poster
Biomarker correlates of clinical response with FLT3L/Nivo backbone treatment in the multi-cohort phase 1 PORTER platform trial in metastatic, castration-resistant prostate cancer patients
Howes et al., SITC (2022)
Cancer
Case Study
SPACE-GM: Decoding Disease-Relevant Microenvironments Using Geometric Deep-Learning
2023
Methods
Poster
A phase 2 study of Ibrutinib as neoadjuvant therapy in patients with localized prostate cancer
Nawaf et al., ASCO GU (2023)
Cancer
Publication
Activating immune recognition in pancreatic ductal adenocarcinoma via autophagy inhibition, MEK blockade, and CD40 agonism
Jiang et al., Gastroenterology (2022)
Cancer
Publication
Graph deep learning for the characterization of tumor microenvironments from spatial protein profiles in tissue specimens
Wu et al., Nat. Biomed. Eng. (2022)
Cancer
Video Presentation
7-UP: generating in silico CODEX from a small set of immunofluorescence markers
